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"Early Events in Human Diseases (EEHD)"

Collaborating Countries:
France - Russian Federation- Ukraine - Latvia

 
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Epub a head of print

Articles:
1. Velichko AK, Petrova NV, Razin SV, Kantidze OL. Mechanism of heat stress-induced cellular senescence elucidates the exclusive vulnerability of early S-phase cells to mild genotoxic stress. Nucleic Acids Res. 2015 Jun 1. pii: gkv573. PubMed PMID: 26032771. 2.

2015

Articles:
1. Fomina EE, Pestryakov PE, Kretov DA, Zharkov DO, Ovchinnikov LP, Curmi PA, Lavrik OI. Inhibition of abasic site cleavage in bubble DNA by multifunctional protein YB-1. J Mol Recognit. 2015 Feb;28(2):117-23. PubMed PMID: 25605055.
2. Razin SV, Gavrilov AA, Ulyanov SV. [Regulatory elements of the eukaryotic genome controlling transcription]. Mol Biol (Mosk). 2015 Mar-Apr;49(2):212-23. PubMed PMID: 26065251.
3. Gavrilov AA, Razin SV. [Compartmentalization of the cell nucleus and spatial organization of the genome]. Mol Biol (Mosk). 2015 Jan-Feb;49(1):26-45. Russian. PubMed PMID: 25916108.
4. Stepanenko A, Andreieva S, Korets K, Mykytenko D, Huleyuk N, Vassetzky Y, Kavsan V. Step-wise and punctuated genome evolution drive phenotype changes of tumor cells. Mutat Res. 2015 Jan;771:56-69. PubMed PMID: 25771981.
5. Fomina EE, Pestryakov PE, Maltseva EA, Petruseva IO, Kretov DA, Ovchinnikov LP, Lavrik OI. Y-box binding protein 1 (YB-1) promotes detection of DNA bulky lesions by XPC-HR23B factor. Biochemistry (Mosc). 2015 Feb;80(2):219-27.
6. Kutuzov MM, Khodyreva SN, Ilina ES, Sukhanova MV, Ame JC, Lavrik OI. Interaction of PARP-2 with AP site containing DNA. Biochimie. 2015 May;112:10-9.

2014

Articles:
1. Petrova NV, Velichko AK, Kantidze OL, Razin SV. Heat shock-induced dissociation of TRF2 from telomeres does not initiate a telomere-dependent DNA damage response. Cell Biol Int. 2014 May;38(5):675-81.
2. Allinne J, Pichugin A, Iarovaia O, Klibi M, Barat A, Zlotek-Zlotkiewicz E, Markozashvili D, Petrova N, Camara-Clayette V, Ioudinkova E, Wiels J, Razin SV, Ribrag V, Lipinski M, Vassetzky YS. Perinucleolar relocalization and nucleolin as crucial events in the transcriptional activation of key genes in mantle cell lymphoma. Blood. 2014 Mar 27;123(13):2044-53.
3. Dmitriev P, Kairov U, Robert T, Barat A, Lazar V, Carnac G, Laoudj-Chenivesse D, Vassetzky YS. Cancer-related genes in the transcription signature of facioscapulohumeral dystrophy myoblasts and myotubes. J Cell Mol Med. 2014 Feb;18(2):208-17.
4. Gushchanskaya ES, Artemov AV, Ulyanov SV, Logacheva MD, Penin AA, Kotova ES, Akopov SB, Nikolaev LG, Iarovaia OV, Sverdlov ED, Gavrilov AA, Razin SV. The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes. Epigenetics. 2014 Jul;9(7):951-63. PMID: 24736527
5. Razin SV, Iarovaia OV, Vassetzky YS. A requiem to the nuclear matrix: from a controversial concept to 3D organization of the nucleus. Chromosoma. 2014 Jun;123(3):217-24. PMID: 24664318
6. Razin SV, Gavrilov AA. Chromatin without the 30-nm fiber: Constrained disorder instead of hierarchical folding. Epigenetics. 2014 May;9(5):653-7. PMID: 24561903
7. Kisseljova NP, Dmitriev P, Katargin A, Kim E, Ezerina D, Markozashvili D, Malysheva D, Planche E, Lemmers RJ, van der Maarel SM, Laoudj-Chenivesse D, Lipinski M, Vassetzky YS. DNA polymorphism and epigenetic marks modulate the affinity of a scaffold/matrix attachment region to the nuclear matrix. Eur J Hum Genet. 2014 Sep;22(9):1117-23.
8. Gushchanskaya ES, Artemov AV, Ulyanov SV, Logacheva MD, Penin AA, Kotova ES, Akopov SB, Nikolaev LG, Iarovaia OV, Sverdlov ED, Gavrilov AA, Razin SV. The clustering of CpG islands may constitute an important determinant of the 3D organization of interphase chromosomes. Epigenetics. 2014 Jul;9(7):951-63. PMID: 24736527
9. Razin SV, Iarovaia OV, Vassetzky YS. A requiem to the nuclear matrix: from a controversial concept to 3D organization of the nucleus. Chromosoma. 2014 Jun;123(3):217-24. PMID: 24664318
10. Razin SV, Gavrilov AA. Chromatin without the 30-nm fiber: Constrained disorder instead of hierarchical folding. Epigenetics. 2014 May;9(5):653-7. PMID: 24561903
11. Kisseljova NP, Dmitriev P, Katargin A, Kim E, Ezerina D, Markozashvili D, Malysheva D, Planche E, Lemmers RJ, van der Maarel SM, Laoudj-Chenivesse D, Lipinski M, Vassetzky YS. DNA polymorphism and epigenetic marks modulate the affinity of a scaffold/matrix attachment region to the nuclear matrix. Eur J Hum Genet. 2014 Sep;22(9):1117-23.
12. Gushchanskaia ES, Artemov AA, Ul'ianov SV, Penin AA, Logacheva MD, Razin SV, Gavrilov AA. [Spatial organization of house-keeping genes in interphase nuclei]. Mol Biol (Mosk). 2014 Nov-Dec;48(6):1008-18. PubMed PMID: 25845242.
13. Kutuzov MM, Khodyreva SN, Schreiber V, Lavrik OI. [The role of PARP2 in DNA repair]. Mol Biol (Mosk). 2014 Jul-Aug;48(4):561-72. PubMed PMID: 25842842.
14. Sukhanova MV, D'Herin C, Boiteux S, Lavrik OI. Interaction of Ddc1 and RPA with single-stranded/double-stranded DNA junctions in yeast whole cell extracts: Proteolytic degradation of the large subunit of replication protein A in ddc1? strains. DNA Repair (Amst). 2014 Oct;22:30-40.

2013

Articles:
1. Dmitriev P, Stankevicins L, Ansseau E, Petrov A, Barat A, Dessen P, Robert T, Turki A, Lazar V, Labourer E, Belayew A, Carnac G, Laoudj-Chenivesse D, Lipinski M, Vassetzky YS. Defective regulation of microRNA target genes in myoblasts from facioscapulohumeral dystrophy patients. J Biol Chem. 2013 Dec 6;288(49):34989-5002.
2. Stepanenko AA, Vassetzky YS, Kavsan VM. Antagonistic functional duality of cancer genes. Gene. 2013 Oct 25;529(2):199-207.
3. Dmitriev P, Barat A, Polesskaya A, O'Connell MJ, Robert T, Dessen P, Walsh TA, Lazar V, Turki A, Carnac G, Laoudj-Chenivesse D, Lipinski M, Vassetzky YS. Simultaneous miRNA and mRNA transcriptome profiling of human myoblasts reveals a novel set of myogenic differentiation-associated miRNAs and their target genes. BMC Genomics. 2013 Apr 18;14:265.
4. Pirozhkova I, Barat A, Dmitriev P, Kim E, Robert T, Guegan J, Bilhou-Nabera C, Busato F, Tost J, Carnac G, Laoudj-Chenivesse D, Lipinski M, Vassetzky Y. Differences in transcription patterns between induced pluripotent stem cells produced from the same germ layer are erased upon differentiation. PLoS One. 2013;8(1):e53033.
5. Kutuzov MM, Khodyreva SN, Ame JC, Ilina ES, Sukhanova MV, Schreiber V, Lavrik OI. Interaction of PARP-2 with DNA structures mimicking DNA repair intermediates and consequences on activity of base excision repair proteins. Biochimie. 2013 Jun;95(6):1208-15.

2012

Articles:
1. KHODYREVA S. N., KUTUZOV M. M., LAVRIK O. I. Role of poly(ADP-ribose)polymerase 2 in DNA repair Biopolym. Cell 2012. Vol. 28. N 3 P. 199-201
2. LEBEDEVA N. A., RECHKUNOVA N. I., LAVRIK O. I. The new base excision repair pathway in mammals mediated by tyrosyl-DNA-phosphodiesterase 1 Biopolym. Cell 2012. Vol. 28. N 3 P. 202-206
3. RECHKUNOVA N. I., KRASIKOVA Y. S., MALTSEVA E. A., LAVRIK O. I. Photoreactive DNA as a tool for studying topography of nucleotide excision repair complex Biopolym.Cell 2012. Vol. 28. N 3 P. 207-211
4. EVDOKIMOV A. N., TSIDULKO A. Yu., PETRUSEVA I. O., KOROLEVA L. S., SERPOKRYLOVA I. Yu., SILNIKOV V. N., LAVRIK O. I. Synthesis of model DNA and their application as substrates of nucleotide excision repair Biopolym.Cell 2012. Vol. 28. N 3 P. 212–217
5. BELOUSOVA E. A., LAVRIK O. I. Study of the activity of DNA polymerases β and λ using 5-formyluridine containing DNA substrates Biopolym.Cell 2012. Vol. 28. N 3 P. 218-222
6. ZAKHARENKO A. L., SALOMATINA O. V., SUKHANOVA M. V., KUTUZOV M. M., ILINA E. S., KHODYREVA S. N., SCHREIBER V., SALAKHUTDINOV N. F., LAVRIK O. I. Glycyrrhetinic acid and its derivatives as inhibitors of poly(ADP-ribose)polymerases 1 and 2, apurinic/apyrimidinic endonuclease 1 and DNA polymerase β Biopolym.Cell 2012. Vol. 28. N 3 P. 223-228
7. DERGAI O. V., DERGAI M. V., SKRYPKINA I. Ya., TSYBA L. O., YARUCHIK A. M., RYNDITCH A. V. Amphiphysin 1 and 2 interact with latent membrane protein 2A of Epstein-Barr virus and regulate its exosomal secretion Biopolym.Cell 2012. Vol. 28. N 3 P. 234-238
8. KUTUZOV M. M., ZAKHARENKO A. L., SUKHANOVA M. V., KHODYREVA S. N., KHOMENKO T. M., VOLCHO K. P., SALAKHUTDINOV N. F., LAVRIK O. I. Polysulfide compounds as inhibitors of the key base excision repair enzymes Biopolym. Cell 2012. Vol. 28. N 3 P. 239-241
9. GAVRILOV A. A., RAZIN S. V., IAROVAIA O. V. C-methods to study 3D organization of the eukaryotic genome Biopolym. Cell 2012. Vol. 28. N 4 P. 245-251
10. ULIANOV S. V., MARKOVA E. N., GAVRILOV A. A., RAZIN S. V. Insulators in vertebrates: regulatory mechanisms and chromatin structure Biopolym. Cell 2012. Vol. 28. N 4 P. 252-260
11. KOULINTCHENKO M. V., DIETRICH A., KONSTANTINOV Yu. M. Mitochondrial genetic transformation via biotechnological approaches or natural competence mechanism: do we have a choice? Biopolym. Cell 2012. Vol. 28. N 4 P. 261-266
12. STEPANENKO A. A., KAVSAN V. M. Evolutionary karyotypic theory of cancer versus conventional cancer gene mutation theory Biopolym. Cell 2012. Vol. 28. N 4 P. 267-280
13. ALGRET R., DOKUDOVSKAYA S. S. The SEA complex – the beginning Biopolym. Cell 2012. Vol. 28. N 4 P. 281-284
14. TSFASMAN T., KLIBI M., PICHUGIN A., LIPINSKI M., VASSETZKY Y. S. HIV: implication in Burkitt lymphoma. Biopolym. Cell 2012. Vol. 28. N 4 P. 285-287
15. ENDUTKIN A. V., SIDORENKO V. S., ZHARKOV D. O. Genotoxicity of a carcinogenic metabolite of benzo[a]pyrene for cells of neuronal differentiation lineage Biopolym. Cell 2012. Vol. 28. N 4 P. 298-301
16. GRIN I. R., VASILYEVA S. V., DOVGERD A. P., SILNIKOV V. N., ZHARKOV D. O. Human and bacterial DNA polymerases discriminate against 7,8-dihydro-8-oxo-2'-deoxyadenosine-5'-triphosphate Biopolym. Cell 2012. Vol. 28. N 4 P. 306-309
17. KLIMENKO E. S., ZAPOROZHCHENKO I. A., MILEYKO V. A., MOROZKIN E. S., KOULINTCHENKO M. V., LAKTIONOV P. P., KONSTANTINOV Yu. M. Human cultured cells are capable to incorporate isolated plant mitochondria loaded with exogenous DNA Biopolym. Cell 2012. Vol. 28. N 4 P. 310-313
18. NOVOKHATSKA O. V., SKRYPKINA I. Ya., DERGAI M. V., TSYBA L. O., RYNDITCH A. V. RTK signaling regulator SPRY2 associates with endocytic adaptor ITSN1 in vivo Biopolym. Cell 2012. Vol. 28. N 4 P. 314-316
19. PESTRYAKOV P. E., KHODYREVA S. N., CURMI P. A., OVCHINNIKOV L. P., LAVRIK O. I. Effect of multifunctional protein YB-1 on the AP site cleavage by AP endonuclease 1and tyrosyl phosphodiesterase 1 Biopolym. Cell 2012. Vol. 28. N 4 P. 317-321
20. SUDAKOV N. P., POPKOVA T. P., NOVIKOVA M. A., KATYSHEV A. I., NIKIFOROV S. B., PUSHKAREV B. G., GOLDBERG O. A., KLIMENKOV I. B., LEPEKHOVA S. A., EZHIKEEVA S. D., TEN M. N., OSIPOV V. G., KONSTANTINOV Yu. M. The level of blood plasma mitochondrial DNA upon acute myocardium damage in experiment Biopolym. Cell 2012. Vol. 28. N 4 P. 322-325
21. Ioudinkova ES, Barat A, Pichugin A, Markova E, Sklyar I, Pirozhkova I, Robin C, Lipinski M, Ogryzko V, Vassetzky YS, Razin SV. Distinct distribution of ectopically expressed histone variants H2A.Bbd and MacroH2A in open and closed chromatin domains. PLoS One. 2012;7(10):e47157.
22. Pestryakov P, Zharkov DO, Grin I, Fomina EE, Kim ER, Hamon L, Eliseeva IA, Petruseva IO, Curmi PA, Ovchinnikov LP, Lavrik OI. Effect of the multifunctional proteins RPA, YB-1, and XPC repair factor on AP site cleavage by DNA glycosylase NEIL1. J Mol Recognit. 2012 Apr;25(4):224-33. doi: 10.1002/jmr.2182. PubMed PMID: 22434712.
23. Sjakste N, Bielskiene K, Bagdoniene L, Labeikyte D, Gutcaits A, Vassetzky Y, Sjakste T. Tightly bound to DNA proteins: possible universal substrates for intranuclear processes. Gene. 2012 Jan 15;492(1):54-64.

2011

Abstracts:
IV International Meeting «Early Events in Human Pathologies» (12–16 October 2011 Yerevan, Republic of Armenia) Biopolym.Cell2011. Vol. 27. N 5, P. 408-420
Articles:
1. Razin, S.V., Gavrilov, A.A., Pichugin, A., Lipinski, M., Iarovaia, O.V. and VASSETZKY, Y.S. (2011) Transcription factories in the context of the nuclear and genome organization. Nucl. Acids. Res., 1–8 doi:10.1093/nar/gkr683
2. Rubtsov, M.A., Allinne, J., Pichugin, A.,VASSETZKY, Y.S., Razin, S.V., and Iarovaia, O.V. (2011) Treatment of lymphoid cells with the topoisomerase II poison etoposide leads to an increased juxtaposition of AML1 and ETO genes on the surface of nucleoli. Biopolymers and cell, 27(5):398-403
3. Sjakste, N., Bagdoniene, L., Gutcaits, A., Labeikyte, D., Bielskene, K., Trapina I., Muiznieks, I., VASSETZKY, Y., Sjakste, T. (2011) Proteins Tightly Bound to DNA. Gene, doi:10.1016/j.gene.2011.09.019.
4. Ioudinkova, E.S., Barat, A., Pichugin, A., Markova, E., Pirozhkova, I., Robin, C., Lipinski, M., Ogryzko, V., VASSETZKY*, Y.S. and Razin, S.V. (2011) Distinct distribution of histone variants H2A.Bbd and macroH2A in open and closed chromatin domains. BMC Genomics,
5.Smirnov I, Carletti E, Kurkova I, Nachon F, Nicolet Y, Mitkevich VA, Debat H, Avalle B, Belogurov AA Jr, Kuznetsov N, Reshetnyak A, Masson P, Tonevitsky AG, Ponomarenko N, Makarov AA, Friboulet A, Tramontano A, Gabibov A. (2011) Reactibodies generated by kinetic selection couple chemical reactivity with favorable protein dynamics. Proc Natl Acad Sci U S A. 108(38):15954-9
6.Gabibov AG, Belogurov AA Jr, Lomakin YA, Zakharova MY, Avakyan ME, Dubrovskaya VV, Smirnov IV, Ivanov AS, Molnar AA, Gurtsevitch VE, Diduk SV, Smirnova KV, Avalle B, Sharanova SN, Tramontano A, Friboulet A, Boyko AN, Ponomarenko NA, Tikunova NV. (2011) Combinatorial antibody library from multiple sclerosis patients reveals antibodies that cross-react with myelin basic protein and EBV antigen. FASEB J. 2011 (12):4211-21
7.Stepanov AV, Belogurov AA Jr, Ponomarenko NA, Stremovskiy OA, Kozlov LV, Bichucher AM, Dmitriev SE, Smirnov IV, Shamborant OG, Balabashin DS, Sashchenko LP, Tonevitsky AG, Friboulet A, Gabibov AG, Deyev SM. (2011) Design of targeted B cell killing agents.PLoS One. 2011;6(6):e20991
8.Zakharov AV, Smirnov IV, Serebriakova MV, Dronina MA, Kaznacheeva AV, Kurkova IN, Belogurov AA, Friboulet A, Ponomarenko NA, Gabibov AG, Bobik TV.(2011) Expression of the catalytic antibodies in eukaryotic systemsMol Biol (Mosk). 45(1):86-95.
9. Khaindrava V, Salin P, Melon C, Ugrumov M, Kerkerian-Le-Goff L, Daszuta A. (2011) High frequency stimulation of the subthalamic nucleus impacts adult neurogenesis in a rat model of Parkinson's disease.Neurobiol Dis. 2011 Jun;42(3):284-91
10.Abramova MA, Calas A, Ugrumov M. (2011) Vasopressinergic neurons of the supraoptic nucleus in perinatal rats: reaction to osmotic stimulation and its regulation. Brain Struct Funct. 2011 Jan;215(3-4):195-207.
11. Abrahamyan S. S., Meliksetyan I. B., Sahakyan I. K., Tumasyan N. V., Badalyan B. Yu., Galoyan A. A. Brain plasticity of rats exposed to prenatal immobilization stress Biopolym. Cell 2011. Vol. 27. N 5, P. 339-342
12. Areshkov P. O., Avdieiev S. S., Iershov A. V., Kavsan V. M. Stimulation of transient versus sustained ERK1/2 phosphorylation by relative chitinase-like proteins CHI3L1 and CHI3L2 correlates with different kinase localization and biological outcome Biopolym. Cell 2011. Vol. 27. N 5, P. 343-346
13. Chailakhyan R. K., Galoyan A. A., Gerasimov Yu. V., Stepanova E. V., Chailakhyan M. R., Solomko E. Sh. Effect of proline-rich polypeptide on various lines of tumour cells, normal bone marrow and giant-cell tumour stromal tissue Biopolym. Cell 2011. Vol. 27. N 5, P. 347-349
14. Danielyan K. E., Kevorkian G. A. Xanthine oxidase activity regulates human embryonic brain cells growth Biopolym. Cell 2011. Vol. 27. N 5, P. 350-353
15. Davtyan T. K., Avetisyan S. A., Hakobyan G. S. Mutations in MEFV cause alterations in neutrophil F-actin and phagocytosis dynamics Biopolym. Cell 2011. Vol. 27. N 5, P. 354-358
16. Dmitriev P. V., Barat A. L., Cochet E., Ogryzko V. V., Laoudj-Chenivesse D., Lipinski M., Vassetzky Y. S. FSHD myoblasts fail to downregulate intermediate filament protein vimentin during myogenic differentiation Biopolym.Cell 2011. Vol. 27. N 5, P. 359-363
17. Gavrilov A. A., Philonenko E. S., Iarovaia O. V., Razin S. V. Dynamic nature of active chromatin hubs Biopolym.Cell 2011. Vol. 27. N 5, P. 364-368
18. Harutyunyan L. R. Results on complex treatment of patients with glial tumors of brain with local chemotherapy Biopolym.Cell 2011. Vol. 27. N 5, P. 373-376
19. Karalyan Z. A., Avagyan H. R. Selective cytotoxicity and modification activity of picornaviruses on transformed cell lines Biopolym.Cell2011. Vol. 27. N 5, P. 377-380
20. Kobbi L., Dias J., Octobre G., Comisso M., Kaminska M., Shalak V. F., Mirande M. Association of mitochondrial lysyl-tRNA synthetase with HIV-1 GagPol involves catalytic domain of the synthetase and transframe and integrase domains of Pol Biopolym.Cell2011. Vol. 27. N 5, P. 381-382
21. Kutuzov M. M., Ame J.-C., Khodyreva S. N., Schreiber V., Lavrik O. I. Interaction of PARP2 with DNA structures mimicking DNA repair intermediates Biopolym.Cell2011. Vol. 27. N 5, P. 383-386
22. Lazyan M. P., Davtyan H. H., Batikyan T. B., Kazaryan R. A., Alexanyan K. A., Galstyan H. M., Tadevosyan Yu. V. Disturbances in lipid second messengers generation by stimulated blood lymphocytes in breast cancer Biopolym.Cell2011. Vol. 27. N 5, P. 387-389
23. Massade L. Characterization and vectorization of siRNA targeting RET/PTC1 in human papillary thyroid carcinoma cells Biopolym.Cell2011. Vol. 27. N 5, P. 390-393
24. Nazaryan N. S., Movsesyan N. H., Alchujyan N. Kh., Movsesyan H. A., Guevorkian A. G., Hairapetyan H. L., Barsegyan K. A., Kevorkian G. A. Region-specific nitric oxide production in cytosolic and mitochondrial compartments of the rat brain tissues following chronic stress-induced depression-like behavior Biopolym.Cell2011. Vol. 27. N 5, P. 394-397
25. Ter-Pogosyan Z. R. Parameters оf cytokine regulation as additional criterion of immunodiagnosis Biopolym.Cell2011. Vol. 27. N 5, P. 404-407 26. Sukhanova MV, D'Herin C, van der Kemp PA, Koval VV, Boiteux S, Lavrik OI. Ddc1 checkpoint protein and DNA polymerase ? interact with nick-containing DNA repair intermediate in cell free extracts of Saccharomyces cerevisiae. DNA Repair (Amst). 2011 Aug 15;10(8):815-25.

2010

Abstracts:
III International Meeting «Early events in Human Pathologies» (29 May–1 June 2010, Barbizon, France) Biopolym. Cell 2010. Vol. 26. N 3 P. 225-250
Articles:
1. Dergai O, Novokhatska O, Dergai M, Skrypkina I, Tsyba L, Moreau J, Rynditch A. (2010) Intersectin 1 forms complexes with SGIP1 and Reps1 in clathrin-coated pits. Biochem Biophys Res Commun. 2010 Oct 12. 402(2):408-13
2. Havrylenko S, Legouis R, Negrutskii B, Mirande M. (2010) Methionyl-tRNA synthetase from Caenorhabditis elegans. A specific multi-domain organization for convergent functional evolution. Protein Sci. 2010 (12):2475-84. doi: 10.1002/pro.529
3. Salafet OV, Ruzina ND, Ponomarenko NA, Friboulet A, Kimova MV, Shmidt TE, Gabibov AG, Morse HK, Pal'tsev MA, Suchkov SV. (2010) Diagnostic and pathogenetic implications of the site specificity of antibody proteases in multiple sclerosis. Vestn Ross Akad Med Nauk. 2010;(4):8-15.
4. Golan, G., Ishchenko, A.A., Khassenov, B., Shoham, G. and Saparbaev, M.K. (2010) Coupling of the nucleotide incision and 3'-->5' exonuclease activities in Escherichia coli endonuclease IV: Structural and genetic evidences. Mutat Res,2010 Mar 1;685(1-2):70-9
5. Sjakste N, Bagdoniene L, Gutcaits A, Labeikyte D, Bielskiene K, Trapina I, Muižnieks I, Vassetzky Y, Sjakste T. Proteins tightly bound to DNA: new data and old problems. Biochemistry (Mosc). 2010 Oct;75(10):1240-51. PubMed PMID: 21166641.

2009

Abstracts:
Symposium «Molecular Mechanism of Human Pathologies» 29 May - 1 June 2009, Kyiv Biopolym. Cell, 2009. Vol. 25. N 4 P.319-334
Articles:
1. Iarovaia OV, Borounova V, Phylonenko E., Kantidze, O., Vassetzky, YS, Razin SV (2009) In embryonic chicken erythrocytes actively transcribed alpha globin genes are not associated with the nuclear matrix. J. Cell Biochem, 106:170-178.
2. Gavrilov A., Eivazova E. R., Pirozhkova I., Lipinski M., Razin S. V., Vassetzky Y. S. (2009) Chromosome conformation capture (3C) and its ChIP-based modifications; Methods in Molecular Biology, 567:171-188.
3. Eivazova E. R., Gavrilov A., Pirozhkova I., Petrov A., Iarovaia O.V., Razin S. V., Lipinski M., Vassetzky, Y. S. (2009) Interaction in vivo between the two matrix attachment regions flanking a single chromatin loop. J. Mol.Biol., 386: 929-937.
4. Klochkov, D.B., Gavrilov, A.V., Vassetzky, Y.S., Razin S.V. (2009) Early replication timing of the chicken ?-globin gene domain correlates with its open chromatin state in cells of different lineages. Genomics, 93:481-486.
5. Kaminska M, Havrylenko S, Decottignies P, Le Marechal P, Negrutskii B, Mirande M (2009) Dynamic Organization of Aminoacyl-tRNA Synthetase Complexes in the Cytoplasm of Human Cells. J Biol Chem 284:13746-13754
6. Kaminska M, Havrylenko S, Decottignies P, Gillet S, Le Marechal P, Negrutskii B, Mirande M (2009) Dissection of the structural organization of the aminoacyl-tRNA synthetase complex. J Biol Chem 284:6053-6060
7. Kurkova IN, Reshetnyak AV, Durova OM, Knorre VD, Tramontano A, Friboulet A, Ponomarenko NA, Gabibov AG, Smirnov IV. (2009) Antibodies-antidotes against organophosphorus compounds. Dokl Biochem Biophys. 425:94-97.
8. Durova OM, Vorobiev II, Smirnov IV, Reshetnyak AV, Telegin GB, Shamborant OG, Orlova NA, Genkin DD, Bacon A, Ponomarenko NA, Friboulet A, Gabibov AG. (2009) Strategies for induction of catalytic antibodies toward HIV-1 glycoprotein gp120 in autoimmune prone mice. Mol Immunol. 47:87-95
9.Couve-Privat, S., Mace-Aime, G., Rosselli, F. and Saparbaev, M.K. (2009) Human oxidative DNA glycosylase NEIL1 excises psoralen-induced interstrand DNA cross-links in the three-stranded DNA structure. J. Biol. Chem. 284:11963-11970.
11.Chernov KG, Barbet A, Hamon L, Ovchinnikov LP, Curmi PA, Pastre D. (2009) Role of microtubules in stress granule assembly: Microtubule dynamical instability favors the formation of micrometric stress granules in cells. J Biol Chem. 2009, 284(52):36569-80
12.Urtikova NA, Sapronova AIa, Brisorgueil MJ, Verge D, Ugriumov MV. (2009) Development of serotonergic neurons of dorsal raphe nuclei in mice with knockout of monoamine oxidase A and 5-HT1A and 5-HT1B autoreceptor. Ontogenez. 40:270-81
13. Izvolskaia M, Duittoz AH, Tillet Y, Ugrumov MV. (2009) The influence of catecholamine on the migration of gonadotropin-releasing hormone-producing neurons in the rat foetuses. Brain Struct Funct. 213:289-300
14. Boisselier B., Marie Y., El Hallani S., Kaloshi G., Iershov A., Kavsan V., Psimaras D., Thillet J., Hoang-Xuan K., Delattre J.Y., Sanson M. No association of (-131C-->G) variant of CHI3L1 gene with risk of glioblastoma and prognosis. J Neurooncol., 2009, 94:169-172.
15. Vassetzky Y. S., Ioudinkova E. S., Razin S. V. MARs Wars: heterogeneity and clustering of DNA-binding domains in the nuclear matrix Biopolym. Cell. 2009. Vol. 25. N.6 P.451-456